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Ph.D. Student | AI Researcher Exploring Neurosymbolic AI & its Applications Across Domains

Graduate Research Assistant at Indiana University Indianapolis

Indianapolis, Indiana, United States🇺🇸
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I am a Ph.D. student at Indiana University's Luddy School, where my research intersects AI and computational biology. Initially focused on the complexities of the tumor microenvironment using advanced spatial and single-cell technologies, I am now expanding my expertise into Neurosymbolic AI and exploring its applications across various domains.

With a strong foundation in Computer Science and programming, I integrate computational methods to solve complex problems and uncover insights from data. My passion for continuous learning drives me to explore innovative projects that bridge the gap between AI and real-world applications, from healthcare to other cutting-edge fields.

Let's connect and discuss how we can collaborate to push the boundaries of AI and its transformative potential across industries.

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Career: 5

Graduate Research Assistant

Indiana University Indianapolis

Indianapolis, Indiana, United States

Aug 2023 - Present

• Developed a comprehensive pipeline to analyze the effects of neoadjuvant chemotherapy on pancreatic cancer, using spatial, single‑cell, and bulk RNA‑seq data for holistic insights. • Optimized ISCHIA algorithm by translating codebase from R to Julia, achieving a remarkable 1500x speedup in processing time and enhancing research efficiency. • Developed a pipeline for processing subcellular spatial RNA‑seq data (stereo‑seq), leveraging advanced deep learning methods to extract single‑cell level information, facilitating high‑resolution tissue analysis

Research Assistant

Zayed University

Dubai, United Arab Emirates

Jul 2022 - Jun 2023

• Designed and implemented a Python framework extending the Carla simulator by integrating a PGM model to simulate dynamic environments representing real‑world scenarios, particularly focusing on unpredictable elements such as pedestrian behavior and traffic patterns. • Engineered an innovative system of intelligent sensor towers within CARLA, leveraging multi‑modal sensor fusion techniques to provide comprehensive environmental data for autonomous vehicles. • Contributed to advancing autonomous driving research by providing a more realistic and challenging virtual testing environment, potentially accelerating the development and validation of self‑driving technologies.

Data Engineer

Afiniti

Islamabad, Islāmābād, Pakistan

Mar 2021 - Nov 2021

• Worked as part of the data engineering team, focusing on optimizing data pipelines and ensuring the accuracy and efficiency of data flow. • Led large‑scale data conversions, transforming raw datasets into standardized formats using Talend, enhancing the reliability of the data for analytical purposes. • Collaborated closely with cross‑functional teams to address data inconsistencies and streamline ETL processes, significantly reducing data processing times. • Developed monitoring tools to track the health and performance of data pipelines, allowing for proactive maintenance and reduced downtime.

Graduate Research And Teaching Assistant

Ghulam Ishaq Khan Institute of Engineering Sciences and Technology

Swabi, Khyber Pakhtunkhwa, Pakistan

Aug 2019 - Jul 2021

• Designed and developed a capsule-based deep learning model for emotion classification using EEG signals. • Developed and deployed an emotion classification NLP model using PyTorch, FastAPI, Firebase, and GCP. • Developed a 3D pose-detection model using skeleton data, giving state-of-the-art results on a huge 3D video dataset.

Software Engineer

Computer and Communication Research Lab

Haripur District, Khyber Pakhtunkhwa, Pakistan

Mar 2016 - May 2018

• Designed an opinion mining system using OpenER which collects data using Twitter API and displays the results in colorful interactive visualizations using D3.js. • Developed an online Secure Paper Printing portal, Sprint, using ASP.NET to be used by Faculty Members in the University for efficient and organized paper printing.

Skills: 51

Other

AlgorithmsAndroid DevelopmentArtificial Intelligence (AI)Augmented Reality (AR)Autonomous VehiclesBERT (Language Model)C++Cancer Biology
Cancer GenomicsCARLACompetitive ProgrammingComputer ScienceComputer VisionData EngineeringData StructuresDeep LearningDeep Reinforcement LearningEEGExtract, Transform, Load (ETL)FastAPIFirebaseGoogle ARCoreGoogle Cloud Platform (GCP)JavaJavaScriptJulia (Programming Language)KotlinLarge Language Models (LLM)Machine LearningModeling and SimulationNatural Language Processing (NLP)NeuroSymbolic AIOptimizationPresentation SkillsProbabilistic ModelsProblem SolvingPython (Programming Language)PyTorchQuantum ComputingR (Programming Language)Research SkillsRNAseq AnalysisSingle Cell OmicsSpatial OmicsSpeech RecognitionSQLSvelteTalendTensorFlowTranscriptomicsTransformer Models

Projects: 3

ISCHIA: LR Co-occurrence Analysis

Nov 2023 - Jan 2024

• Optimized the ISCHIA algorithm by translating its codebase from R to Julia, significantly enhancing processing speed. • Achieved a 1500x speedup in processing time, reducing the runtime from nearly 3 hours to just 6 seconds on their dataset.

EmotiFire: Emotion Classification

Aug 2020 - Nov 2020

Developed an NLP model for emotion classification using transfer learning from BERT. • Designed and implemented a REST API with FastAPI, deployed on GCP, and utilized Firebase for data storage. • Built a static web app using Svelte, optimizing load times and enhancing user interaction. • Technologies Used: BERT, FastAPI, Firebase, GCP, Svelte.

Khoji: Location Visualization using Augmented Reality

Sep 2010 - Oct 2011

• Designed a real‑time location tracking system with AR visualization for contact locations. • Integrated real‑time chat functionality and a chatbot to enhance user engagement and usability. • Overcame challenges in real‑time data synchronization and AR visualization to ensure smooth user experiences, even in varying network conditions.

Credentials: 19

Sep 2024

Cancer Biology Specialization

The Johns Hopkins University

Mar 2023
Jun 2022

Accelerated Computer Science Fundamentals Specialization

University of Illinois at Urbana Champaign

Jun 2020

Machine Learning for Trading Specialization

New York Institute of Finance

Apr 2020

Deep Reinforcement Learning

Udacity

Nov 2019

Deep Learning

Udacity

Feb 2019
Aug 2018
Feb 2018

Android Developer Nanodegree

Udacity

2018

Machine Learning Engineer Nanodegree

Udacity

Jun 2017
Apr 2016

Education: 3

Luddy School of Informatics, Computing, and Engineering, Indianapolis

Doctor of Philosophy - PhD

Aug 2023 - Jul 2029

• Deepening my expertise in single-cell and spatial technologies at Indiana University's prestigious Luddy School, where I'm a Ph.D. student in Bioinformatics. • Mastering 10x Visium and single-cell platforms to dissect the TME's complexity, fueling my passion for personalized medicine advancements.

Ghulam Ishaq Khan Institute of Engineering Sciences and Technology

Master of Science - MS

Aug 2019 - Jul 2021

My MS in Computer Science from Ghulam Ishaq Khan Institute (GIKI) in 2021 solidified my expertise in advanced deep learning techniques. Thesis research on EEG-based emotion recognition using Capsule Networks not only yielded state-of-the-art results but also honed my skills in data analysis, model development, and scientific communication.

Activities / Societies: Research and Teaching Assistant, Table Tennis

University of Haripur

Bachelor of Science - BS

Jun 2014 - Sep 2018

My BS Computer Science degree from the University of Haripur (UoH) in 2018 was a springboard for both academic and competitive success. Not only did I excel in my coursework, but I also emerged as a champion in multiple programming competitions, showcasing my talent and tenacity in tackling complex problems. My culminating project, an innovative AR system for real-time location tracking and visualization, demonstrated my ability to translate theoretical knowledge into practical solutions, paving the way for my continued passion for building immersive experiences.

Activities / Societies: Horizon, Table Tennis, Competitive Programming

Awards: 4

Introduction to Quantum Computing Scholarship

May 2021

This course took place from October 2022 to May 2021. Students developed a foundational understanding of quantum computing, with topics including introductory linear algebra, coding with Qiskit, quantum mechanics, quantum algorithms, and quantum applications.

Dean’s Honor List

Mar 2021

Highest Distinction Award at GIKI, for four consecutive semesters

NRPU Scholarship

Aug 2020

Fully funded graduate scholarship at GIKI

PyTorch Scholarship

Feb 2019

Ranked in the top 3% among 10,000 participants, leading to the Deep Learning Nanodegree.

Languages: 2

Urdu(Native or bilingual)
English(Full professional)

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